PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G338900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 550aa    MW: 60235.1 Da    PI: 5.1642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G338900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11365407754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Aqcoe5G338900.1.p 365 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 407
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16361429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-12365411No hitNo description
Gene3DG3DSA:4.10.280.109.5E-16365420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.87E-5478519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLPRNNNNGV LWMQEEEEGG EVGVGDGVSW RNNGVVLENK EDMMNSGGGV SSLSTFKSLL  60
EEDWYLNTTS TTTTNNNNNN NSMQNPSHHQ DFQTMQNPIS GENLLLQQLD SSSSCSPSSV  120
FSLDPSQVHS FLPSNKSSLS SLLNVVCNNN NPFENGFDLG FEPGFLMGNH HASTSPVLMN  180
RGNGLLTEFN DLNSQEHMGS HDLSSNSQFV NTHLLPLSDN SGTSFNPIGF GGFESSANSL  240
FLNRPKVLRP LDSFPPLGAQ PTLFQKRAAL RQNSDKGMSL VGDNKGKREF EKEQQKRRRS  300
NDEDELDDAS IDISGLNYDS EDGMDDNNKV DDSEKNGGIN SNANSTVTGG DQKGKKKGPP  360
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR INDLHNELES  420
TSPGSSLPPT TSFHPLTPTP PTLPCRVKEE LCPSSLSSPN SQPARVEVRV REGRAVNIHM  480
FCARRPGLLL SAMKALDGIG LDIQQAVISC FNGFALDVFR AEQCKEGVDV PPEDIKAILM  540
DSAGFHGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354372KKKGPPAKNLMAERRRRKK
2366373ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249206.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-148ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-106bHLH family protein